FSL

Installation

Use ‘fslsetup’ to choose a version (which modifies environment variables):

fslsetup

X2Go display problems

If text is too large or misaligned, then Set Display DPI=100 in the X2Go settings Input/Output tab. This may be useful for FSL’s Feat application on MacOSX.

Tutorial

Tutorial can be downloaded here:

FSL & FreeSurfer Lectures and Practicals

Before starting the tutorial, open a terminal window, and run the following command:

ln -s /usr/local/fsl_course_data $HOME

This will create a symbolic link to the tutorial data from your home directory, so you can follow the tutorial instructions exactly as written.

Documentation

FSL website