.. _fsl:

FSL
===

Installation
------------

Use 'fslsetup' to choose a version (which modifies environment variables)::

    fslsetup


X2Go display problems
---------------------
If text is too large or misaligned, then Set Display DPI=100 in the X2Go settings Input/Output tab.
This may be useful for FSL’s Feat application on MacOSX.


Tutorial
--------
Tutorial can be downloaded here:

| `FSL & FreeSurfer Lectures and Practicals <http://www.fmrib.ox.ac.uk/fslcourse>`_

Before starting the tutorial, open a :ref:`terminal window <cli>`, and run the following command::

    ln -s /usr/local/fsl_course_data $HOME

This will create a symbolic link to the tutorial data from your home directory, so you can follow the tutorial instructions exactly as written.


Documentation
-------------

`FSL website <http://www.fmrib.ox.ac.uk/fsl/fsl/index.html>`_