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The UC Berkeley Neuro cluster is designed for scientific research. It provides secure, high-peformance workstations, redundant data storage, high-speed network, and scientific applications. For details, see the technical specifications.

Our documentation should be current and accurate.
Please email me at support-neuro@berkeley.edu if you have suggestions to improve it.

Neuro Cluster HOWTOΒΆ

  • Unix account
    • open an account
    • change password
    • troubleshooting
  • 2-step authentication
    • enable 2-step
    • Install an app for TOTP 2-step authentication
    • troubleshooting
    • 2-step web browser plugin
    • SSH key
  • Remote Desktop
    • Install Windows App
    • Configure Windows App
    • Using Windows App
    • Gnome Window Manager
    • Persistent sessions
  • command-line login
    • secure shell (ssh) on Mac and Linux
    • secure shell on Windows
  • File transfer
    • sftp
    • secure copy (scp)
    • rsync
  • Mount cluster data
    • SSHFS
  • Data management
    • data backups
    • disk quotas
    • data compression
  • File sharing
    • lab members
    • external collaborators
  • bash shell
    • run a program
    • common commands
    • bash shell script
    • bash iteration
  • MATLAB
    • Compatibility with Mac
    • SPM
    • Toolboxes
  • FSL
    • Configuration
  • FreeSurfer
    • Configuration
  • Python
    • Conda
    • packages
    • Conda integration with Slurm (batch processing)
    • Jupyter Notebook
  • R Project
    • rstudio
    • packages

Logo of Neuro Cluster

Supported Labs

  • Jagust Lab
  • Knight Lab
  • Weiner Lab
  • Walker Lab
  • Bunge Lab
  • Shenhav Lab

Email Support

support-neuro@berkeley.edu

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